tidy3d.HeatSimulationData#

class tidy3d.HeatSimulationData(*, simulation: tidy3d.components.heat.simulation.HeatSimulation, data: Tuple[tidy3d.components.heat.data.monitor_data.TemperatureData, ...], log: str = None, type: Literal['HeatSimulationData'] = 'HeatSimulationData')#

Bases: tidy3d.components.base_sim.data.sim_data.AbstractSimulationData

Stores results of a heat simulation.

Parameters

simulation (HeatSimulation) – Original HeatSimulation associated with the data.
data (Tuple[TemperatureData, ...]) – List of MonitorData instances associated with the monitors of the original Simulation.
log (Optional[str] = None) – A string containing the log information from the simulation run.

Example

>>> from tidy3d import Medium, SolidSpec, FluidSpec, UniformUnstructuredGrid, SpatialDataArray
>>> from tidy3d import Structure, Box, UniformUnstructuredGrid, UniformHeatSource
>>> from tidy3d import StructureBoundary, TemperatureBC, TemperatureMonitor, TemperatureData
>>> from tidy3d import HeatBoundarySpec
>>> import numpy as np
>>> temp_mnt = TemperatureMonitor(size=(1, 2, 3), name="sample")
>>> heat_sim = HeatSimulation(
...     size=(3.0, 3.0, 3.0),
...     structures=[
...         Structure(
...             geometry=Box(size=(1, 1, 1), center=(0, 0, 0)),
...             medium=Medium(
...                 permittivity=2.0, heat_spec=SolidSpec(
...                     conductivity=1,
...                     capacity=1,
...                 )
...             ),
...             name="box",
...         ),
...     ],
...     medium=Medium(permittivity=3.0, heat_spec=FluidSpec()),
...     grid_spec=UniformUnstructuredGrid(dl=0.1),
...     sources=[UniformHeatSource(rate=1, structures=["box"])],
...     boundary_spec=[
...         HeatBoundarySpec(
...             placement=StructureBoundary(structure="box"),
...             condition=TemperatureBC(temperature=500),
...         )
...     ],
...     monitors=[temp_mnt],
... )
>>> x = [1,2]
>>> y = [2,3,4]
>>> z = [3,4,5,6]
>>> coords = dict(x=x, y=y, z=z)
>>> temp_array = SpatialDataArray(300 * np.abs(np.random.random((2,3,4))), coords=coords)
>>> temp_mnt_data = TemperatureData(monitor=temp_mnt, temperature=temp_array)
>>> heat_sim_data = HeatSimulationData(
...     simulation=heat_sim, data=[temp_mnt_data],
... )

__init__(**kwargs)#: Init method, includes post-init validators.

Methods

`__init__`(**kwargs)	Init method, includes post-init validators.
`add_type_field`()	Automatically place "type" field with model name in the model field dictionary.
`construct`([_fields_set])	Creates a new model setting __dict__ and __fields_set__ from trusted or pre-validated data.
`copy`(**kwargs)	Copy a Tidy3dBaseModel.
`data_monitors_match_sim`(val, values)	Ensure each `AbstractMonitorData` in `.data` corresponds to a monitor in `.simulation`.
`dict`(*[, include, exclude, by_alias, ...])	Generate a dictionary representation of the model, optionally specifying which fields to include or exclude.
`dict_from_file`(fname[, group_path])	Loads a dictionary containing the model from a .yaml, .json, .hdf5, or .hdf5.gz file.
`dict_from_hdf5`(fname[, group_path, ...])	Loads a dictionary containing the model contents from a .hdf5 file.
`dict_from_hdf5_gz`(fname[, group_path, ...])	Loads a dictionary containing the model contents from a .hdf5.gz file.
`dict_from_json`(fname)	Load dictionary of the model from a .json file.
`dict_from_yaml`(fname)	Load dictionary of the model from a .yaml file.
`from_file`(fname[, group_path])	Loads a `Tidy3dBaseModel` from .yaml, .json, .hdf5, or .hdf5.gz file.
`from_hdf5`(fname[, group_path, custom_decoders])	Loads `Tidy3dBaseModel` instance to .hdf5 file.
`from_hdf5_gz`(fname[, group_path, ...])	Loads `Tidy3dBaseModel` instance to .hdf5.gz file.
`from_json`(fname, **parse_obj_kwargs)	Load a `Tidy3dBaseModel` from .json file.
`from_orm`(obj)
`from_yaml`(fname, **parse_obj_kwargs)	Loads `Tidy3dBaseModel` from .yaml file.
`generate_docstring`()	Generates a docstring for a Tidy3D mode and saves it to the __doc__ of the class.
`get_sub_model`(group_path, model_dict)	Get the sub model for a given group path.
`get_submodels_by_hash`()	Return a dictionary of this object's sub-models indexed by their hash values.
`get_tuple_group_name`(index)	Get the group name of a tuple element.
`get_tuple_index`(key_name)	Get the index into the tuple based on its group name.
`help`([methods])	Prints message describing the fields and methods of a `Tidy3dBaseModel`.
`json`(*[, include, exclude, by_alias, ...])	Generate a JSON representation of the model, include and exclude arguments as per dict().
`parse_file`(path, *[, content_type, ...])
`parse_obj`(obj)
`parse_raw`(b, *[, content_type, encoding, ...])
`plot_field`(monitor_name[, val, scale, ...])	Plot the data for a monitor with simulation plot overlayed.
`schema`([by_alias, ref_template])
`schema_json`(*[, by_alias, ref_template])
`to_file`(fname)	Exports `Tidy3dBaseModel` instance to .yaml, .json, or .hdf5 file
`to_hdf5`(fname[, custom_encoders])	Exports `Tidy3dBaseModel` instance to .hdf5 file.
`to_hdf5_gz`(fname[, custom_encoders])	Exports `Tidy3dBaseModel` instance to .hdf5.gz file.
`to_json`(fname)	Exports `Tidy3dBaseModel` instance to .json file
`to_yaml`(fname)	Exports `Tidy3dBaseModel` instance to .yaml file.
`tuple_to_dict`(tuple_values)	How we generate a dictionary mapping new keys to tuple values for hdf5.
`update_forward_refs`(**localns)	Try to update ForwardRefs on fields based on this Model, globalns and localns.
`updated_copy`(**kwargs)	Make copy of a component instance with `**kwargs` indicating updated field values.
`validate`(value)
`validate_no_ambiguity`(val, values)	Ensure all `AbstractMonitorData` entries in `.data` correspond to different monitors in `.simulation`.

Attributes

`monitor_data`	Dictionary mapping monitor name to its associated `AbstractMonitorData`.
`simulation`
`data`

class Config#

Bases: object

Sets config for all Tidy3dBaseModel objects.

allow_population_by_field_namebool = True: Allow properties to stand in for fields(?).
arbitrary_types_allowedbool = True: Allow types like numpy arrays.
extrastr = ‘forbid’: Forbid extra kwargs not specified in model.
json_encodersDict[type, Callable]: Defines how to encode type in json file.
validate_allbool = True: Validate default values just to be safe.
validate_assignmentbool: Re-validate after re-assignment of field in model.

__eq__(other)#: Define == for two Tidy3DBaseModels.

__ge__(other)#: define >= for getting unique indices based on hash.

__getitem__(monitor_name: str) → tidy3d.components.base_sim.data.monitor_data.AbstractMonitorData#: Get a AbstractMonitorData by name. Apply symmetry if applicable.

__gt__(other)#: define > for getting unique indices based on hash.

__hash__() → int#: Hash method.

classmethod __init_subclass__() → None#: Things that are done to each of the models.

__iter__() → TupleGenerator#: so dict(model) works

__le__(other)#: define <= for getting unique indices based on hash.

__lt__(other)#: define < for getting unique indices based on hash.

__pretty__(fmt: Callable[[Any], Any], **kwargs: Any) → Generator[Any, None, None]#: Used by devtools (https://python-devtools.helpmanual.io/) to provide a human readable representations of objects

__repr_name__() → str#: Name of the instance’s class, used in __repr__.

__rich_repr__() → RichReprResult#: Get fields for Rich library

classmethod __try_update_forward_refs__(**localns: Any) → None#: Same as update_forward_refs but will not raise exception when forward references are not defined.

classmethod add_type_field() → None#: Automatically place “type” field with model name in the model field dictionary.

classmethod construct(_fields_set: Optional[SetStr] = None, **values: Any) → Model#: Creates a new model setting __dict__ and __fields_set__ from trusted or pre-validated data. Default values are respected, but no other validation is performed. Behaves as if Config.extra = ‘allow’ was set since it adds all passed values

copy(**kwargs) → tidy3d.components.base.Tidy3dBaseModel#: Copy a Tidy3dBaseModel. With deep=True as default.

classmethod data_monitors_match_sim(val, values)#: Ensure each AbstractMonitorData in .data corresponds to a monitor in .simulation.

dict(*, include: Optional[Union[AbstractSetIntStr, MappingIntStrAny]] = None, exclude: Optional[Union[AbstractSetIntStr, MappingIntStrAny]] = None, by_alias: bool = False, skip_defaults: Optional[bool] = None, exclude_unset: bool = False, exclude_defaults: bool = False, exclude_none: bool = False) → DictStrAny#: Generate a dictionary representation of the model, optionally specifying which fields to include or exclude.

classmethod dict_from_file(fname: str, group_path: Optional[str] = None) → dict#

Loads a dictionary containing the model from a .yaml, .json, .hdf5, or .hdf5.gz file.

Parameters

fname (str) – Full path to the file to load the Tidy3dBaseModel from.
group_path (str, optional) – Path to a group inside the file to use as the base level.

Returns

A dictionary containing the model.

Return type

dict

Example

>>> simulation = Simulation.from_file(fname='folder/sim.json') 

classmethod dict_from_hdf5(fname: str, group_path: str = '', custom_decoders: Optional[List[Callable]] = None) → dict#

Loads a dictionary containing the model contents from a .hdf5 file.

Parameters

fname (str) – Full path to the .hdf5 file to load the Tidy3dBaseModel from.
group_path (str, optional) – Path to a group inside the file to selectively load a sub-element of the model only.
custom_decoders (List[Callable]) – List of functions accepting (fname: str, group_path: str, model_dict: dict, key: str, value: Any) that store the value in the model dict after a custom decoding.

Returns

Dictionary containing the model.

Return type

dict

Example

>>> sim_dict = Simulation.dict_from_hdf5(fname='folder/sim.hdf5') 

classmethod dict_from_hdf5_gz(fname: str, group_path: str = '', custom_decoders: Optional[List[Callable]] = None) → dict#

Loads a dictionary containing the model contents from a .hdf5.gz file.

Parameters

fname (str) – Full path to the .hdf5.gz file to load the Tidy3dBaseModel from.
group_path (str, optional) – Path to a group inside the file to selectively load a sub-element of the model only.
custom_decoders (List[Callable]) – List of functions accepting (fname: str, group_path: str, model_dict: dict, key: str, value: Any) that store the value in the model dict after a custom decoding.

Returns

Dictionary containing the model.

Return type

dict

Example

>>> sim_dict = Simulation.dict_from_hdf5(fname='folder/sim.hdf5.gz') 

classmethod dict_from_json(fname: str) → dict#

Load dictionary of the model from a .json file.

Parameters: fname (str) – Full path to the .json file to load the Tidy3dBaseModel from.
Returns: A dictionary containing the model.
Return type: dict

Example

>>> sim_dict = Simulation.dict_from_json(fname='folder/sim.json') 

classmethod dict_from_yaml(fname: str) → dict#

Load dictionary of the model from a .yaml file.

Parameters: fname (str) – Full path to the .yaml file to load the Tidy3dBaseModel from.
Returns: A dictionary containing the model.
Return type: dict

Example

>>> sim_dict = Simulation.dict_from_yaml(fname='folder/sim.yaml') 

classmethod from_file(fname: str, group_path: Optional[str] = None, **parse_obj_kwargs) → tidy3d.components.base.Tidy3dBaseModel#

Loads a Tidy3dBaseModel from .yaml, .json, .hdf5, or .hdf5.gz file.

Parameters

fname (str) – Full path to the file to load the Tidy3dBaseModel from.
group_path (str, optional) – Path to a group inside the file to use as the base level. Only for hdf5 files. Starting / is optional.
**parse_obj_kwargs – Keyword arguments passed to either pydantic’s parse_obj function when loading model.

Returns

An instance of the component class calling load.

Return type

Tidy3dBaseModel

Example

>>> simulation = Simulation.from_file(fname='folder/sim.json') 

classmethod from_hdf5(fname: str, group_path: str = '', custom_decoders: Optional[List[Callable]] = None, **parse_obj_kwargs) → tidy3d.components.base.Tidy3dBaseModel#

Loads Tidy3dBaseModel instance to .hdf5 file.

Parameters

fname (str) – Full path to the .hdf5 file to load the Tidy3dBaseModel from.
group_path (str, optional) – Path to a group inside the file to selectively load a sub-element of the model only. Starting / is optional.
custom_decoders (List[Callable]) – List of functions accepting (fname: str, group_path: str, model_dict: dict, key: str, value: Any) that store the value in the model dict after a custom decoding.
**parse_obj_kwargs – Keyword arguments passed to pydantic’s parse_obj method.

Example

>>> simulation = Simulation.from_hdf5(fname='folder/sim.hdf5') 

classmethod from_hdf5_gz(fname: str, group_path: str = '', custom_decoders: Optional[List[Callable]] = None, **parse_obj_kwargs) → tidy3d.components.base.Tidy3dBaseModel#

Loads Tidy3dBaseModel instance to .hdf5.gz file.

Parameters

fname (str) – Full path to the .hdf5.gz file to load the Tidy3dBaseModel from.
group_path (str, optional) – Path to a group inside the file to selectively load a sub-element of the model only. Starting / is optional.
custom_decoders (List[Callable]) – List of functions accepting (fname: str, group_path: str, model_dict: dict, key: str, value: Any) that store the value in the model dict after a custom decoding.
**parse_obj_kwargs – Keyword arguments passed to pydantic’s parse_obj method.

Example

>>> simulation = Simulation.from_hdf5_gz(fname='folder/sim.hdf5.gz') 

classmethod from_json(fname: str, **parse_obj_kwargs) → tidy3d.components.base.Tidy3dBaseModel#

Load a Tidy3dBaseModel from .json file.

Parameters

fname (str) – Full path to the .json file to load the Tidy3dBaseModel from.

Returns

Tidy3dBaseModel – An instance of the component class calling load.
**parse_obj_kwargs – Keyword arguments passed to pydantic’s parse_obj method.

Example

>>> simulation = Simulation.from_json(fname='folder/sim.json') 

classmethod from_yaml(fname: str, **parse_obj_kwargs) → tidy3d.components.base.Tidy3dBaseModel#

Loads Tidy3dBaseModel from .yaml file.

Parameters

fname (str) – Full path to the .yaml file to load the Tidy3dBaseModel from.
**parse_obj_kwargs – Keyword arguments passed to pydantic’s parse_obj method.

Returns

An instance of the component class calling from_yaml.

Return type

Tidy3dBaseModel

Example

>>> simulation = Simulation.from_yaml(fname='folder/sim.yaml') 

classmethod generate_docstring() → str#: Generates a docstring for a Tidy3D mode and saves it to the __doc__ of the class.

classmethod get_sub_model(group_path: str, model_dict: dict | list) → dict#: Get the sub model for a given group path.

get_submodels_by_hash() → Dict[int, List[Union[str, Tuple[str, int]]]]#: Return a dictionary of this object’s sub-models indexed by their hash values.

static get_tuple_group_name(index: int) → str#: Get the group name of a tuple element.

static get_tuple_index(key_name: str) → int#: Get the index into the tuple based on its group name.

help(methods: bool = False) → None#

Prints message describing the fields and methods of a Tidy3dBaseModel.

Parameters: methods (bool = False) – Whether to also print out information about object’s methods.

Example

>>> simulation.help(methods=True) 

json(*, include: Optional[Union[AbstractSetIntStr, MappingIntStrAny]] = None, exclude: Optional[Union[AbstractSetIntStr, MappingIntStrAny]] = None, by_alias: bool = False, skip_defaults: Optional[bool] = None, exclude_unset: bool = False, exclude_defaults: bool = False, exclude_none: bool = False, encoder: Optional[Callable[[Any], Any]] = None, models_as_dict: bool = True, **dumps_kwargs: Any) → str#

Generate a JSON representation of the model, include and exclude arguments as per dict().

encoder is an optional function to supply as default to json.dumps(), other arguments as per json.dumps().

property monitor_data: Dict[str, tidy3d.components.base_sim.data.monitor_data.AbstractMonitorData]#: Dictionary mapping monitor name to its associated AbstractMonitorData.

plot_field(monitor_name: str, val: Literal['real', 'abs', 'abs^2'] = 'real', scale: Literal['lin', 'log'] = 'lin', structures_alpha: float = 0.2, robust: bool = True, vmin: float = None, vmax: float = None, ax: matplotlib.axes._axes.Axes = None, **sel_kwargs) → matplotlib.axes._axes.Axes#

Plot the data for a monitor with simulation plot overlayed.

Parameters

field_monitor_name (str) – Name of TemperatureMonitorData to plot.
val (Literal['real', 'abs', 'abs^2'] = 'real') – Which part of the field to plot.
scale (Literal['lin', 'log']) – Plot in linear or logarithmic scale.
structures_alpha (float = 0.2) – Opacity of the structure permittivity. Must be between 0 and 1 (inclusive).
robust (bool = True) – If True and vmin or vmax are absent, uses the 2nd and 98th percentiles of the data to compute the color limits. This helps in visualizing the field patterns especially in the presence of a source.
vmin (float = None) – The lower bound of data range that the colormap covers. If None, they are inferred from the data and other keyword arguments.
vmax (float = None) – The upper bound of data range that the colormap covers. If None, they are inferred from the data and other keyword arguments.
ax (matplotlib.axes._subplots.Axes = None) – matplotlib axes to plot on, if not specified, one is created.
sel_kwargs (keyword arguments used to perform .sel() selection in the monitor data.) – These kwargs can select over the spatial dimensions (x, y, z), or time dimension (t) if applicable. For the plotting to work appropriately, the resulting data after selection must contain only two coordinates with len > 1. Furthermore, these should be spatial coordinates (x, y, or z).

Returns

The supplied or created matplotlib axes.

Return type

matplotlib.axes._subplots.Axes

to_file(fname: str) → None#

Exports Tidy3dBaseModel instance to .yaml, .json, or .hdf5 file

Parameters: fname (str) – Full path to the .yaml or .json file to save the Tidy3dBaseModel to.

Example

>>> simulation.to_file(fname='folder/sim.json') 

to_hdf5(fname: str, custom_encoders: Optional[List[Callable]] = None) → None#

Exports Tidy3dBaseModel instance to .hdf5 file.

Parameters

fname (str) – Full path to the .hdf5 file to save the Tidy3dBaseModel to.
custom_encoders (List[Callable]) – List of functions accepting (fname: str, group_path: str, value: Any) that take the value supplied and write it to the hdf5 fname at group_path.

Example

>>> simulation.to_hdf5(fname='folder/sim.hdf5') 

to_hdf5_gz(fname: str, custom_encoders: Optional[List[Callable]] = None) → None#

Exports Tidy3dBaseModel instance to .hdf5.gz file.

Parameters

fname (str) – Full path to the .hdf5.gz file to save the Tidy3dBaseModel to.
custom_encoders (List[Callable]) – List of functions accepting (fname: str, group_path: str, value: Any) that take the value supplied and write it to the hdf5 fname at group_path.

Example

>>> simulation.to_hdf5_gz(fname='folder/sim.hdf5.gz') 

to_json(fname: str) → None#

Exports Tidy3dBaseModel instance to .json file

Parameters: fname (str) – Full path to the .json file to save the Tidy3dBaseModel to.

Example

>>> simulation.to_json(fname='folder/sim.json') 

to_yaml(fname: str) → None#

Exports Tidy3dBaseModel instance to .yaml file.

Parameters: fname (str) – Full path to the .yaml file to save the Tidy3dBaseModel to.

Example

>>> simulation.to_yaml(fname='folder/sim.yaml') 

classmethod tuple_to_dict(tuple_values: tuple) → dict#: How we generate a dictionary mapping new keys to tuple values for hdf5.

classmethod update_forward_refs(**localns: Any) → None#: Try to update ForwardRefs on fields based on this Model, globalns and localns.

updated_copy(**kwargs) → tidy3d.components.base.Tidy3dBaseModel#: Make copy of a component instance with **kwargs indicating updated field values.

classmethod validate_no_ambiguity(val, values)#: Ensure all AbstractMonitorData entries in .data correspond to different monitors in .simulation.